Files in jmc200/Rcade
R-based analysis of ChIP-seq And Differential Expression - a tool for integrating a count-based ChIP-seq analysis with differential expression summary data
.BBSoptions
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/Rcade-Methods.R
R/Rcade-OutputMethods.R
R/Rcade-PlotMethods.R
R/RcadeAnalysis.R
R/RcadeTrack-Methods.R
R/aaa.R
R/checkTargets.R
R/constructRcadeTable.R
R/countReads.R
R/defineBins.R
R/diffCountsBaySeq.R
R/sanitizeDElookup.R
R/zzz.R
README
TODO
data/RcadeSTAT1.rda
data/datalist
inst/CITATION
inst/extdata/STAT1/DE.csv
inst/extdata/STAT1/anno.csv
inst/extdata/STAT1/targets.csv
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3InputIfng30StdAlnRep1.bam
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3InputIfng30StdAlnRep1.bam.bai
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3InputStdAlnRep1.bam
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3InputStdAlnRep1.bam.bai
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3Stat1Ifng30StdAlnRep1.bam
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3Stat1Ifng30StdAlnRep1.bam.bai
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3Stat1Ifng30StdAlnRep2.bam
inst/extdata/STAT1/wgEncodeSydhTfbsHelas3Stat1Ifng30StdAlnRep2.bam.bai
inst/unitTests/test_modules.R
man/Rcade-class.Rd
man/RcadeAnalysis.Rd
man/RcadeSTAT1.Rd
man/RcadeTrack-class.Rd
man/constructRcadeTable.Rd
man/countReads.Rd
man/defineBins.Rd
man/diffCountsBaySeq.Rd
man/exportRcade-methods.Rd
tests/runTests.R
vignettes/Rcade.Rnw
vignettes/plotBBB.png
