jianhong/enhancerHomologSearch: Identification of putative mammalian orthologs to given enhancer
Get ENCODE data of enhancer region via H3K4me1 peaks and search homolog regions for given sequences. The candidates of enhancer homolog regions can be filtered by distance to target TSS. The top candidates from human and mouse will be aligned to each other and then exported as multiple alignments with given enhancer.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Alignment GeneRegulation Sequencing |
| Maintainer | |
| License | GPL (>= 2) |
| Version | 1.13.0 |
| URL | https://jianhong.github.io/enhancerHomologSearch |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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