In jaspershen/metID: Metabolite identification based on MS1 and MS2 spectra

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  # fig.width = 7, 
  # fig.height = 5,
  warning = FALSE,
  message = TRUE,
  fig.path = "man/figures/",
  out.width = "100%"
)

library("badger")

metID

cat(
    badge_cran_release("metID", "green"),
    badge_code_size(ref = "jaspershen/metID"),
    badge_dependencies(),
    badge_lifecycle()
    # badge_cran_download("badger", "grand-total", "green"),
    # badge_cran_download("badger", "last-month", "green"),
    # badge_cran_download("badger", "last-week", "green")
)

About

metID is a R package which is used for metabolite identification based on in-house database and public database based on accurate mass (m/z), retention time (RT) and/or MS2 spectra.

Installation

You can install metID from Github.

if(!require(devtools)){
install.packages("devtools")
}
devtools::install_github("jaspershen/metID")

tinyTools is a dependent package for metID. Please install it too.

if(!require(devtools)){
install.packages("devtools")
}
devtools::install_github("jaspershen/tinyTools")

Usage

Please see the Get started page to get the instruction of metID.

Need help?

If you have any quesitions about metID, please don't hesitate to email me ([e-mail]).

shenxt1990

[e-mail]

Twitter

M339, Alway Buidling, Cooper Lane, Palo Alto, CA 94304

Citation

If you use metID in you publication, please cite this publication:

X. Shen, R. Wang, X. Xiong, Y. Yin, Y. Cai, Z. Ma, N. Liu, and Z.-J. Zhu* (Corresponding Author), Metabolic Reaction Network-based Recursive Metabolite Annotation for Untargeted Metabolomics, Nature Communications, 2019, 10: 1516.
Web Link.

Thanks very much!

jaspershen/metID documentation built on July 31, 2022, 11:31 p.m.