Man pages for j-andrews7/CRISPRball
Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering
| build_depmap_db | Build SQLite database of DepMap data |
| CRISPRball | Create an interactive Shiny app for visualization &... |
| depmap_22q1_cn | DepMap copy number data |
| depmap_22q1_crispr | DepMap CRISPR screen data |
| depmap_22q1_crispr_rnai | DepMap CRISPR & RNAi screen data |
| depmap_22q1_rnai | DepMap RNAi screen data |
| depmap_22q1_TPM | DepMap expression data |
| gene_ingress | Parse gene summary data for easier plotting and display |
| get_depmap_essentiality | Get essential/selective gene information from DepMap summary... |
| get_depmap_plot_data | Create DepMap dataframe for plotting |
| plot_bar | Create interactive bar plot |
| plot_correlation_heatmap | Plot a Correlation Heatmap |
| plot_depmap_cn | Plot gene copy number information from DepMap |
| plot_depmap_dependency | Plot gene dependency information from DepMap CRISPR and RNAi... |
| plot_depmap_expression | Plot gene expression information from DepMap, mostly from... |
| plot_depmap_lineages | Plot selected information across lineages from DepMap. |
| plot_hist | Create a plotly plot from a distribution of values |
| plot_lawn | Create an interactive lawn plot |
| plot_pca_biplot | Plot a biplot from a PCAtools 'pca' object |
| plot_rank | Create an interactive rank plot |
| plot_volcano | Create an interactive volcano plot |
| read_mle_gene_summary | Read and parse MAGeCK MLE output gene summary file |
