Man pages for ipb-halle/MetFamily
MetFamily: Discovering Regulated Metabolite Families in Untargeted Metabolomics Studies
| add_qfeatures | Add qfeatures to dataList |
| addSiriusAnnotations | Add Sirius Annotations |
| calcPlotDendrogram | Prepare dendrogram plot |
| calcPlotDendrogram_plotly | Prepare Dendrogram for Plotly |
| calcPlotHeatmap | Plot Heatmap |
| calcPlotHeatmapLegend | Prep Heatmap Legend |
| calcPlotMS2 | MS2 Plot |
| calcPlotMS2Legend | MS2 plot legend |
| calcPlotPCAloadings | calcPlotPCAloadings |
| calcPlotPCAscores | PCA plot |
| calculatePCA | Calculate PCA |
| castListEntries | Cast logical's and numeric's in a list or data.frame |
| colorPaletteScores | Colors |
| convertToProjectFile | Convert to Project File |
| data.numericmatrix | Convert data.frame columns to numeric |
| filterData | Filter a dataList |
| getAvailableClassifiers | Classifiers |
| load_metfamily_dependencies | Run library for all packages |
| metaboliteFamilyVersusClass | Title |
| MetFamily-package | MetFamily: MetFamily: Discovering Regulated Metabolite... |
| mzClustGeneric | Alignment of high resolution mass spectra |
| parseMSP_attributes | parseMSP_attributes |
| parsePeakAbundanceMatrixQF | Title |
| performPca | Run PCA |
| pipe | Pipe operator |
| processMS1data | Process MS-Dial-like MS1 data.frame |
| readClusterDataFromProjectFile | Read MetFamily Project data saved by the export function |
| readMetaboscape | Read Metaboscape Output File into a QFeatures Object |
| readMSDial | Read MS-DIAL Output File into a QFeatures Object |
| readProjectData | Read MetFamily Project data saved by the export function |
| reexports | Objects exported from other packages |
| runMetFamily | Start the web app in browser |
| sparseMatrixToString | Flatten listObject to string for export |
| swap_names_and_values | Swap a vector's names and values |
