Files in iofeidis/tripr
T-cell Receptor/Immunoglobulin Profiler (TRIP)
.Rbuildignore
.gitignore
CITATION.cff
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/app_config.R
R/app_server.R
R/app_ui.R
R/global.R
R/helpers.R
R/run_TRIP_without_ui.R
R/run_app.R
R/tripr-package.R
R/zzz.R
README.Rmd
README.md
inst/CITATION
inst/app/www/Alignment_pipeline.png
inst/app/www/Clonotypes_pipeline.png
inst/app/www/Preselection.png
inst/app/www/Preselection_Clean_table.png
inst/app/www/Preselection_Summary.png
inst/app/www/Selection.png
inst/app/www/Selection_visual.png
inst/app/www/ajax-loader-bar.gif
inst/app/www/alignment_tab.png
inst/app/www/choose_files.png
inst/app/www/clonotypes_tab.png
inst/app/www/favicon.ico
inst/app/www/highly_sim_clono_tab.png
inst/app/www/highly_sim_shared_pipeline.png
inst/app/www/highly_similar_pipeline.png
inst/app/www/hist3d_visual.png
inst/app/www/insert_identity_pipeline.png
inst/app/www/multiple_tab.png
inst/app/www/mv_pipeline.png
inst/app/www/overview.png
inst/app/www/pipeline_overview.png
inst/app/www/repertoires_pipeline.png
inst/app/www/repertoires_tab.png
inst/app/www/shared_clono_pipeline.png
inst/app/www/shiny.css
inst/app/www/style.css
inst/app/www/tripr.png
inst/app/www/upload_data.png
inst/app/www/visual_clono.png
inst/extdata/dataset/BcellA/10_V-REGION-mutation-hotspots.txt
inst/extdata/dataset/BcellA/11_Parameters.txt
inst/extdata/dataset/BcellA/1_Summary.txt
inst/extdata/dataset/BcellA/2_IMGT-gapped-nt-sequences.txt
inst/extdata/dataset/BcellA/3_Nt-sequences.txt
inst/extdata/dataset/BcellA/4_IMGT-gapped-AA-sequences.txt
inst/extdata/dataset/BcellA/5_AA-sequences.txt
inst/extdata/dataset/BcellA/6_Junction.txt
inst/extdata/dataset/BcellA/7_V-REGION-mutation-and-AA-change-table.txt
inst/extdata/dataset/BcellA/8_V-REGION-nt-mutation-statistics.txt
inst/extdata/dataset/BcellA/9_V-REGION-AA-change-statistics.txt
inst/extdata/dataset/BcellA/README.txt
inst/extdata/dataset/BcellB/10_V-REGION-mutation-hotspots.txt
inst/extdata/dataset/BcellB/11_Parameters.txt
inst/extdata/dataset/BcellB/1_Summary.txt
inst/extdata/dataset/BcellB/2_IMGT-gapped-nt-sequences.txt
inst/extdata/dataset/BcellB/3_Nt-sequences.txt
inst/extdata/dataset/BcellB/4_IMGT-gapped-AA-sequences.txt
inst/extdata/dataset/BcellB/5_AA-sequences.txt
inst/extdata/dataset/BcellB/6_Junction.txt
inst/extdata/dataset/BcellB/7_V-REGION-mutation-and-AA-change-table.txt
inst/extdata/dataset/BcellB/8_V-REGION-nt-mutation-statistics.txt
inst/extdata/dataset/BcellB/9_V-REGION-AA-change-statistics.txt
inst/extdata/dataset/BcellB/README.txt
inst/extdata/on_reload.html
inst/extdata/param/Germline_sequences_alignments_IGHV_aa.csv
inst/extdata/param/Germline_sequences_alignments_IGHV_nt.csv
inst/extdata/param/Germline_sequences_alignments_IGKV_aa.csv
inst/extdata/param/Germline_sequences_alignments_IGKV_nt.csv
inst/extdata/param/Germline_sequences_alignments_IGLV_aa.csv
inst/extdata/param/Germline_sequences_alignments_IGLV_nt.csv
inst/extdata/param/used_columns.csv
inst/extdata/param/used_columns_only_useful.csv
inst/golem-config.yml
inst/script/dataset_example.txt
inst/script/run_trip_rscript.R
man/run_TRIP.Rd
man/run_app.Rd
man/tripr.Rd
tests/testthat.R
tests/testthat/test-imgtcleaning.R
tests/testthat/test-imgtfilter.R
vignettes/.gitignore
vignettes/tripr_guide.Rmd
