R/sample_dataset_CEU.R

In hubentu/PAIRADISE: PAIRADISE: Paired analysis of differential isoform expression

#' sample_dataset_CEU
#'
#' The CEU dataset was generated by analyzing the allele-specific
#' alternative splicing events in the GEUVADIS CEU
#' data. Allele-specific reads were mapped onto alternative splicing
#' events using rPGA (version 2.0.0). Then the allele-specific bam
#' files mapped onto the two haplotypes are merged together to detect
#' alternative splicing events using rMATS (version 3.2.5)16.
#' 
#' @docType data
#' @format The dataset has 7 columns, arranged as follows:
#' \describe{
#' \item{ExonID}{Column 1 contains the ID of the alternative splicing events.}
#' \item{I1}{Column 2 contains counts of isoform 1 corresponding to the first group.}
#' \item{S1}{Column 3 contains counts of isoform 2 corresponding to the first group.}
#' \item{I2}{Column 4 contains counts of isoform 1 corresponding to the second group.}
#' \item{S2}{Column 5 contains counts of isoform 2 corresponding to the second group.}
#' \item{I_len}{Column 6 contains the effective length of isoform 1.}
#' \item{S_len}{Column 7 contains the effective length of isoform 2.}
#' }
#' @rdname sample_dataset
#' @name sample_dataset_CEU
#' @usage data(sample_dataset_CEU)
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