Files in hshdndx/new-to-CNV
patternCNV: a versatile tool for detecting copy number changes from exome-seq data
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/AllMethods.R
R/R file explanation
R/chrCoverageQC.R
R/computeMultiCNV.R
R/computeSingleCNV.R
R/createSession.R
R/estimateFDR.R
R/exportCNVtable.R
R/fitNullModel.R
R/geneCoverageQC.R
R/learnPatterns.R
R/makeSimulation.R
R/miscFunctions.R
R/plotAutosomeCNV.R
R/plotChrCNV.R
R/plotGeneHeatmap.R
R/scanMultiCovg.R
R/scanSingleCovg.R
R/segmentCNV.R
README.md
data/hg19.Chr_length_vec.RData
data/sim.cnvData.RData
data/sim.covgData.RData
inst/extdata/avg_pattern.wig
inst/extdata/cnv.simulated.sorted.dedup.bam.coverage.wig
inst/extdata/cnv2.simulated.sorted.dedup.bam.coverage.wig
inst/extdata/complete_simu.ini
inst/extdata/mean_RPKM.txt
inst/extdata/median_RPKM.txt
inst/extdata/sim_exon_key.txt
inst/extdata/simple_simu.ini
inst/extdata/simu_sample_info.txt
inst/extdata/simulated1.sorted.dedup.bam.coverage.wig
inst/extdata/simulated10.sorted.dedup.bam.coverage.wig
inst/extdata/simulated2.sorted.dedup.bam.coverage.wig
inst/extdata/simulated3.sorted.dedup.bam.coverage.wig
inst/extdata/simulated4.sorted.dedup.bam.coverage.wig
inst/extdata/simulated5.sorted.dedup.bam.coverage.wig
inst/extdata/simulated6.sorted.dedup.bam.coverage.wig
inst/extdata/simulated7.sorted.dedup.bam.coverage.wig
inst/extdata/simulated8.sorted.dedup.bam.coverage.wig
inst/extdata/simulated9.sorted.dedup.bam.coverage.wig
inst/extdata/var_pattern.wig
man/PatCNVData-class.Rd
man/PatCNVSession-class.Rd
man/avgExonCoverage.Rd
man/chrCoverageQC.Rd
man/cnvMatrix.Rd
man/computeMultiCNV.Rd
man/computeSingleCNV.Rd
man/coverageMatrix.Rd
man/createSession.Rd
man/estimateFDR.Rd
man/exonInfo.Rd
man/exonNum.Rd
man/exportCNVtable.Rd
man/fdrMatrix.Rd
man/fitNullModel.Rd
man/geneCoverageQC.Rd
man/hg19.Chr_length_vec.Rd
man/learnPatterns.Rd
man/makeSimulation.Rd
man/patternCNV-package.Rd
man/plotAutosomeCNV.Rd
man/plotChrCNV.Rd
man/plotGeneHeatmap.Rd
man/sampleCoverage.Rd
man/sampleInfo.Rd
man/sampleNum.Rd
man/scanMultiCovg.Rd
man/scanSingleCovg.Rd
man/segmentCNV.Rd
man/show-methods.Rd
man/sim.cnvData.Rd
man/sim.covgData.Rd
man/summary-methods.Rd
vignettes/patternCNV_vig.Rnw
