Files in hiddengenome/deepG
deepG
.RData
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/classes.R
R/create_model.R
R/data.R
R/generators.R
R/gpu-management.R
R/inference.R
R/package.R
R/predict.R
R/preprocess.R
R/response_viewer.R
R/tSNE.R
R/tensorboard.R
R/train.R
R/translate_model.R
R/utils.R
README.md
_pkgdown.yml
altum.Rproj
codecov.yml
data-raw/crispr_1000.txt
data-raw/crispr_full.R
data-raw/crispr_sample.R
data-raw/crispr_sample.txt
data-raw/ecoli.R
data-raw/ecoli.fasta
data-raw/ecoli_small.R
data-raw/ecoli_small.fasta
data-raw/parenthesis.R
data-raw/parenthesis.txt
data/crispr_full.rda
data/crispr_sample.rda
data/ecoli.rda
data/ecoli_small.rda
data/parenthesis.rda
docs/404.html
docs/LICENSE-text.html
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docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/calculateStepsPerEpoch.html
docs/reference/crispr_full.html
docs/reference/crispr_sample.html
docs/reference/deepG.html
docs/reference/ecoli.html
docs/reference/ecoliCustomScalar.html
docs/reference/ecoliEvaluation.html
docs/reference/ecoli_small.html
docs/reference/end_gpu_session.html
docs/reference/extractCellFromStates.html
docs/reference/fastaFileGenerator.html
docs/reference/figures/aws.png
docs/reference/figures/bmbf.jpeg
docs/reference/figures/dfg.jpg
docs/reference/figures/hzi.jpg
docs/reference/figures/logo.png
docs/reference/generateStatesFromFolder.html
docs/reference/generateStatesromFolder.html
docs/reference/getStates.html
docs/reference/getStatesFromFasta.html
docs/reference/getVocabulary.html
docs/reference/index.html
docs/reference/messagef.html
docs/reference/parenthesis.html
docs/reference/plotTsne.html
docs/reference/predictNextNucleotide.html
docs/reference/prediction-class.html
docs/reference/preprocessFasta.html
docs/reference/preprocessSemiRedundant.html
docs/reference/print.tf.version.html
docs/reference/replaceChar.html
docs/reference/sequenceToArray.html
docs/reference/skip_if_no_keras.html
docs/reference/splitSequence.html
docs/reference/startGPUSession.html
docs/reference/trainNetwork.html
docs/reference/tsneFromStates.html
docs/reference/writeDict.html
docs/reference/writeHdf5.html
docs/sitemap.xml
example_files/crispr.h5
example_files/dummy_model_cpu.hdf5
example_files/example.gff
example_files/example_metadata.csv
example_files/example_model_cpu_new_full_model.hdf5
example_files/fasta/a.fasta
example_files/fasta/b.fasta
example_files/fasta/c.fasta
example_files/fasta/d.fasta
example_files/fasta/e.fasta
example_files/fasta/f.fasta
example_files/genome_full.fasta
example_files/genome_subset.fasta
man/calculateStepsPerEpoch.Rd
man/create_model_lstm_cnn.Rd
man/crispr_full.Rd
man/crispr_sample.Rd
man/deepG.Rd
man/ecoli.Rd
man/ecoliCustomScalar.Rd
man/ecoliEvaluation.Rd
man/ecoli_small.Rd
man/end_gpu_session.Rd
man/evaluateFasta.Rd
man/extractCellFromStates.Rd
man/fastaFileGenerator.Rd
man/fastaLabelGenerator.Rd
man/figures/aws.png
man/figures/bmbf.jpeg
man/figures/dfg.jpg
man/figures/figure.png
man/figures/hzi.jpg
man/figures/logo.png
man/generateStatesFromFolder.Rd
man/getStartInd.Rd
man/getStates.Rd
man/getStatesFromFasta.Rd
man/getVocabulary.Rd
man/get_hyper_param.Rd
man/gpuToCpuModel.Rd
man/initializeGenerators.Rd
man/labelByFolderGenerator.Rd
man/labelByFolderGeneratorWrapper.Rd
man/messagef.Rd
man/nucleotide2value.Rd
man/parenthesis.Rd
man/plotTsne.Rd
man/predictNextNucleotide.Rd
man/prediction-class.Rd
man/preprocessFasta.Rd
man/preprocessSemiRedundant.Rd
man/readRowsFromH5.Rd
man/replaceChar.Rd
man/sequenceToArray.Rd
man/sequenceToArrayLabel.Rd
man/skip_if_no_keras.Rd
man/startGPUSession.Rd
man/statesByFastaOneFile.Rd
man/statesWrapper.Rd
man/trainNetwork.Rd
man/visualizePrediction.Rd
man/writeDict.Rd
man/writeHdf5.Rd
man/writeStates.Rd
man/writeStatesByFastaEntries.Rd
tests/testthat.R
tests/testthat/example_model_cpu_new_full_model.hdf5
tests/testthat/fasta/a.fasta
tests/testthat/fasta/b.fasta
tests/testthat/fasta_2/a.fasta
tests/testthat/fasta_2/b.fasta
tests/testthat/label_folder/x/x1.fasta
tests/testthat/label_folder/x/x2.fasta
tests/testthat/label_folder/y/y1.fasta
tests/testthat/label_folder/y/y2.fasta
tests/testthat/label_folder/z/z1.fasta
tests/testthat/label_folder/z/z2.fasta
tests/testthat/test-gpuManagement.R
tests/testthat/test-inferstates.R
tests/testthat/test-predict.R
tests/testthat/test-preprocess.R
tests/testthat/test-tSNE.R
tests/testthat/test-tensorboard.R
tests/testthat/test-train.R
tests/testthat/test-utlis.R
travis_setup.sh
