selectAnchorsParam: List selectAnchors Defaults

In hhabra/Combiner: Method for Combining LC-MS Metabolomics Feature Measurements

List selectAnchors Defaults

Description

List of default parameters for anchor selection step of main package workflow, which can be used as input for the wrapper functions. See help(selectAnchors) or ?selectAnchors for more details.

Usage

selectAnchorsParam(
  useID = FALSE,
  tolmz = 0.003,
  tolQ = 0.3,
  tolrtq = 0.3,
  windx = 0.03,
  windy = 0.03,
  brackets_ignore = c("(", "[", "{")
)

Arguments

useID	Choice of using IDs for anchor selection; default: FALSE
tolmz	m/z tolerance for ordered pair features; default: 0.003
tolQ	Q tolerance for ordered pair features; default: 0.3
tolrtq	RT quantile tolerance for ordered pair features; default: 0.5
windx	X feature RT window parameter. Default: 0.03
windy	Y feature RT window parameter. Default: 0.03
brackets_ignore	bracket types for ignoring string comparisons

Value

list of selectAnchors parameters

See Also

selectAnchors, metabCombine

Examples

sa_param <- selectAnchorsParam(tolmz = 0.002, tolQ = 0.2, windy = 0.02)

hhabra/Combiner documentation built on June 5, 2024, 10:56 a.m.