hettling/BiGGR: Constraint based modeling in R using metabolic reconstruction databases
This package provides an interface to simulate metabolic reconstruction from the BiGG database(http://bigg.ucsd.edu/) and other metabolic reconstruction databases. The package facilitates flux balance analysis (FBA) and the sampling of feasible flux distributions. Metabolic networks and estimated fluxes can be visualized with hypergraphs.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Anand K. Gavai, Hannes Hettling |
| Bioconductor views | GraphAndNetwork Metabolomics Network Pathway Systems Biology Visualization |
| Maintainer | Anand K. Gavai <anand.gavai@bioinformatics.nl>, Hannes Hettling <hannes.hettling@naturalis.nl> |
| License | file LICENSE |
| Version | 1.19.1 |
| URL | http://www.bioconductor.org/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
