Man pages for grisslab/scAnnotatR
Pretrained learning models for cell type prediction on single cell RNA-sequencing data
| caret_model | caret_model |
| cell_type | cell_type |
| cell_type-set | Setter for cell_type. Change cell type of a classifier |
| classify_cells | Classify cells from multiple models |
| delete_model | Delete model/branch from package |
| internal | Internal functions of scAnnotatR package |
| load_models | Load classifiers from databases |
| marker_genes | marker_genes |
| parent | parent |
| plant_tree | Plant tree from list of models |
| plot_roc_curve | Plot roc curve |
| p_thres | p_thres |
| p_thres-set | Setter for predicting probability threshold |
| save_new_model | Save a model to the package |
| scAnnotatR | scAnnotatR class. |
| show | Show object |
| test_classifier | Testing process. |
| tirosh_mel80_example | A Seurat Object Sample |
| train_classifier | Train cell type classifier |
