NEWS.md

In genomaths/GenomAutomorphism: Compute the automorphisms between DNA's Abelian group representations

GenomAutomorphism 1.8.1

• Add new a new function: 'automorphism_prob', which applies a Dirichlet-Multinomial Modelling (in a Bayesian framework) to compute the posterior probability of each type of mutational event.

GenomAutomorphism 1.5.1

• Introducing new functions for DNA and aminoacid sequence representations with physicochemical properties of DNA and aminoacids, which would be useful for further downstream statistical analysis in R.

GenomAutomorphism 1.0.2

• Fix error of parallel computation on Windows (12/08/2022)

GenomAutomorphism 1.0.1

• Expanding analyses by including aminoacid similarity based on codon distances. Three new functions are added: codon_dist, codon_dist_matrix, and aminoacid_dist. See a tutorial applying these functions at https://is.gd/oYLDK4.

GenomAutomorphism 1.0.0

• Release in Bioconductor (version 3.16). https://doi.org/doi:10.18129/B9.bioc.GenomAutomorphism

GenomAutomorphism 0.99.4

• Expanding analyses by including amino acid similarity and statistical protein contact potentials matrices from from Amino Acid Index Database https://www.genome.jp/aaindex/.
• Improving documentation.
• Fixed a bug which introduced a change of protein coding frameshift.

GenomAutomorphism 0.99.3

• Documentation improvement.
• Package accepted on Bioconductor (07/18/22)

GenomAutomorphism 0.99.2

• Updating several details after the review process in Bioconductor (https://github.com/Bioconductor/Contributions/issues/2678)

GenomAutomorphism 0.99.0

• Available at https://github.com/genomaths/GenomAutomorphism
• Release: February 28, 2022
  • Initial development.

genomaths/GenomAutomorphism documentation built on Jan. 2, 2025, 12:25 a.m.