functionalgenomics/atena: Analysis of Transposable Elements
Quantify expression of transposable elements (TEs) from RNA-seq data through different methods, including ERVmap, TEtranscripts and Telescope. A common interface is provided to use each of these methods, which consists of building a parameter object, calling the quantification function with this object and getting a SummarizedExperiment object as output container of the quantified expression profiles. The implementation allows one to quantify TEs and gene transcripts in an integrated manner.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Coverage DifferentialExpression FunctionalGenomics GeneExpression Preprocessing RNASeq Sequencing Software Transcription Transcriptomics |
| Maintainer | |
| License | Artistic-2.0 |
| Version | 1.13.0 |
| URL | https://github.com/rcastelo/atena |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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