Files in fmicompbio/eisaR
Exon-Intron Split Analysis (EISA) in R
.Rbuildignore
.github/workflows/R-CMD-check.yaml
DESCRIPTION
NAMESPACE
NEWS.md
R/eisa-package.R
R/exportToGtf.R
R/getFeatureRanges.R
R/getRegionsFromTxDb.R
R/getTx2Gene.R
R/plotEISA.R
R/runEISA.R
README.md
_pkgdown.yml
inst/CITATION
inst/extdata/Fig3abc_GSE33252_rawcounts_exonic.rds
inst/extdata/Fig3abc_GSE33252_rawcounts_intronic.rds
inst/extdata/gencode.v28.annotation.sub.gtf
inst/extdata/hg19sub.sqlite
inst/extdata/small_example.gtf
inst/extdata/small_example_genome.fa
inst/extdata/small_example_t2g.txt
inst/extdata/small_example_txome.fa
inst/scripts/generate_example_data.R
inst/www/eisaR.png
man/eisaR-package.Rd
man/exportToGtf.Rd
man/getFeatureRanges.Rd
man/getRegionsFromTxDb.Rd
man/getTx2Gene.Rd
man/plotEISA.Rd
man/runEISA.Rd
tests/testthat.R
tests/testthat/test_getIntronAndTxSeqs.R
tests/testthat/test_getRegionsFromTxDb.R
tests/testthat/test_plotEISA.R
tests/testthat/test_runEISA.R
vignettes/eisaR.Rmd
vignettes/refs.bib
vignettes/rna-velocity.Rmd
