In facileverse/FacileAnalysis: Modularized and interactive analyses over a FacileDataStore

knitr::opts_chunk$set(
  # code or die
  echo = TRUE,
  # minimize verbosity
  warning = FALSE, message = FALSE,
  # dpi = 150, # for hires images
  comment = "#>")
set.seed(0xFEED)

Overview

The goal of this vignette is to collect examples of a variety of publically available analyses and redo them using the packages available in the facileverse. This is useful in two ways:

1. this can help guide the development of packages within the facileverse by identifying things we can't do yet, or should be able to do more easily; and
2. gives examples for end-users of how to perform common analysis tasks within this framework.

Examples can be collected from:

1. Publically available workflows for data analysis, such as those found in: a. Bioconductor Workflow packages. b. Bioconductor Courses. c. Other places?
2. Questions asked on the bioconductor or biostars support sites

Hitlist

• edgeR-QLF genes to reads to pahtways workflow
• glimma 1-2-3 biocworkflow
• rnaseqGene DESeq2 workflow

[//]: # References =============================================================

facileverse/FacileAnalysis documentation built on Sept. 26, 2024, 3:19 p.m.