knitr::opts_chunk$set( collapse = TRUE, comment = "#>", crop = NULL ## Related to https://stat.ethz.ch/pipermail/bioc-devel/2020-April/016656.html )
## Track time spent on making the vignette startTime <- Sys.time() ## Bib setup library("knitcitations") ## Load knitcitations with a clean bibliography cleanbib() cite_options(hyperlink = "to.doc", citation_format = "text", style = "html") ## Write bibliography information bib <- c( R = citation(), BiocStyle = citation("BiocStyle")[1], knitcitations = citation("knitcitations")[1], knitr = citation("knitr")[1], rmarkdown = citation("rmarkdown")[1], sessioninfo = citation("sessioninfo")[1], testthat = citation("testthat")[1], rutils = citation("rutils")[1] ) write.bibtex(bib, file = "rutils.bib")
rutils
if (!requireNamespace("BiocManager", quietly = TRUE)) { install.packages("BiocManager") } BiocManager::install("rutils") ## Check that you have a valid Bioconductor installation BiocManager::valid()
rutils
This is a package designed for personal use only. If you do would like to use rutils::docker_run_rserver()
, I have created a guide you may find useful.
## Session info library("sessioninfo") options(width = 120) session_info()
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