| addDimReduction | Add any dimensionality reduction space to a... |
| addPrcomp | Add a prcomp pca calculation to a SingleCellExperiment object... |
| Darken | Darkens input colors by a set amount |
| demux.calls.summary | Plots the number of annotations per sample, per lane |
| demuxlet.example | demuxlet.example |
| demux.SNP.summary | Plots the number of SNPs sequenced per droplet |
| dittoBarPlot | Outputs a stacked bar plot to show the percent composition of... |
| dittoColors | Extracts the dittoSeq default colors |
| dittoDimPlot | Shows data overlayed on a tsne, pca, or similar type of plot |
| dittoDotPlot | Compact plotting of per group summaries for expression of... |
| dittoFreqPlot | Plot cell type/cluster/identity frequencies per sample and... |
| dittoHeatmap | Outputs a heatmap of given genes |
| dittoHex | Show RNAseq data, grouped into hexagonal bins, on a scatter... |
| dittoPlot | Plots continuous data for customizeable cells'/samples'... |
| dittoPlotVarsAcrossGroups | Generates a dittoPlot where data points are genes/metadata... |
| dittoScatterPlot | Show RNAseq data overlayed on a scatter plot |
| dittoSeq | dittoSeq |
| gene | Returns the expression values of a gene for all cells/samples |
| GeneTargeting | Control of Gene/Feature targeting |
| getGenes | Returns the names of all genes of a target object. |
| getMetas | Returns the names of all meta.data slots of a target object. |
| getReductions | Returns the names of all dimensionality reduction slots of a... |
| importDemux | Extracts Demuxlet information into a pre-made... |
| importDittoBulk | import bulk sequencing data into a SingleCellExperiment... |
| isBulk | Retrieve whether a given object would be treated as bulk... |
| isGene | Tests if input is the name of a gene in a target object. |
| isMeta | Tests if an input is the name of a meta.data slot in a target... |
| Lighten | Lightens input colors by a set amount |
| meta | Returns the values of a meta.data for all cells/samples |
| metaLevels | Gives the distinct values of a meta.data slot (or ident) |
| multi_dittoDimPlot | Generates dittoDimPlots for multiple features. |
| multi_dittoDimPlotVaryCells | Generates multiple dittoDimPlots, for a single feature, where... |
| multi_dittoPlot | Generates dittoPlots for multiple features. |
| setBulk | Set whether a SingleCellExperiment object should be treated... |
| Simulate | Simulates what a colorblind person would see for any dittoSeq... |
