API for dtm2451/DittoSeq
User Friendly Single-Cell and Bulk RNA Sequencing Visualization
| Global functions | |
|---|---|
| .add_by_cell | Source code |
| .add_contours | Source code |
| .add_demux_metas | Source code |
| .add_labels | Source code |
| .add_letters | Source code |
| .add_letters_ellipses_labels_if_discrete | Source code |
| .add_splitting | Source code |
| .add_trajectory_curves | Source code |
| .add_trajectory_lineages | Source code |
| .all_cells | Source code |
| .calc_center_medians | Source code |
| .check_1color_per_group | Source code |
| .check_1value_per_group | Source code |
| .check_barcode_dups | Source code |
| .check_color.method | Source code |
| .check_meta_overwrite | Source code |
| .creat_SE_from_DGEList | Source code |
| .create_SE_from_raw | Source code |
| .data_gather_summarize_vars_by_groups | Source code |
| .default_assay | Source code |
| .default_assay_raw | Source code |
| .default_order | Source code |
| .default_reduction | Source code |
| .default_slot | Source code |
| .default_slot_raw | Source code |
| .dittoBarPlot_data_gather | Source code |
| .dittoPlot_add_data_x_direction | Source code |
| .dittoPlot_add_data_y_direction | Source code |
| .dittoPlot_data_gather | Source code |
| .dittoPlot_data_gather_inner | Source code |
| .ditto_dot_plot | Source code |
| .ditto_scatter_hex | Source code |
| .ditto_scatter_plot | Source code |
| .error_if_no_Seurat | Source code |
| .error_if_no_complexHm | Source code |
| .error_if_no_ggplot.multistats | Source code |
| .error_if_no_ggrastr | Source code |
| .error_if_no_plotly | Source code |
| .extract_Reduced_Dim | Source code |
| .extract_and_parse_demux_calls | Source code |
| .get_heatmap_data | Source code |
| .grab_legend | Source code |
| .keep_levels_if_factor | Source code |
| .leave_default_or_null | Source code |
| .location_.best_to_data.frame | Source code |
| .make_heatmap_annotation_colors | Source code |
| .make_hover_strings_from_df | Source code |
| .make_hover_strings_from_vars | Source code |
| .make_vary_cell_plots_discrete | Source code |
| .make_vary_cell_plots_numeric | Source code |
| .msg_if | Source code |
| .multi_var_gather_raw | Source code |
| .multivar_adjust_split_by | Source code |
| .parse_and_add_lanes | Source code |
| .pick_colors_for_df | Source code |
| .preferred_or_first | Source code |
| .prep_ditto_heatmap | Source code |
| .print_demux_import_summary | Source code |
| .remove_legend | Source code |
| .rename_and_or_reorder | Source code |
| .rep_all_data_per_facet | Source code |
| .retain_factor_level_order | Source code |
| .scale_to_max | Source code |
| .scatter_data_gather | Source code |
| .scatter_data_gather_inner | Source code |
| .summarize_set_by_fxn | Source code |
| .swap_rownames | Source code |
| .var_OR_get_meta_or_gene | Source code |
| .warn_or_jitter_plotly | Source code |
| .which_cells | Source code |
| .which_data | Source code |
| Darken | Man page Source code |
| GeneTargeting | Man page |
| Lighten | Man page Source code |
| Simulate | Man page Source code |
| addDimReduction | Man page Source code |
| addPrcomp | Man page Source code |
| demux.SNP.summary | Man page Source code |
| demux.calls.summary | Man page Source code |
| demuxlet.example | Man page |
| dittoBarPlot | Man page Source code |
| dittoBoxPlot | Man page Source code |
| dittoColors | Man page Source code |
| dittoDimHex | Man page Source code |
| dittoDimPlot | Man page Source code |
| dittoDotPlot | Man page Source code |
| dittoFreqPlot | Man page Source code |
| dittoHeatmap | Man page Source code |
| dittoHex | Man page |
| dittoPlot | Man page Source code |
| dittoPlotVarsAcrossGroups | Man page Source code |
| dittoRidgeJitter | Man page Source code |
| dittoRidgePlot | Man page Source code |
| dittoScatterHex | Man page Source code |
| dittoScatterPlot | Man page Source code |
| dittoSeq | Man page |
| dittoSeq-package | Man page |
| gene | Man page Source code |
| getGenes | Man page Source code |
| getMetas | Man page Source code |
| getReductions | Man page Source code |
| importDemux | Man page Source code |
| importDittoBulk | Man page Source code |
| isBulk | Man page Source code |
| isGene | Man page Source code |
| isMeta | Man page Source code |
| meta | Man page Source code |
| metaLevels | Man page Source code |
| multi_dittoDimPlot | Man page Source code |
| multi_dittoDimPlotVaryCells | Man page Source code |
| multi_dittoPlot | Man page Source code |
| setBulk | Man page |
| setBulk,SingleCellExperiment-method | Man page |
