API for drighelli/VisiumExperiment
S4 Class for Spatially Resolved -omics Data

Global functions
$,SpatialExperiment-method	Man page
.DollarNames.SpatialExperiment	Source code
.colData_validity	Source code
.flush_cache	Source code
.get_from_cache	Source code
.get_imgData	Source code
.get_img_idx	Source code
.imgData_validity	Source code
.mirror	Source code
.msg_spatialData	Source code
.read_xyz	Source code
.remote_file_cache	Source code
.rotate	Source code
.sce_to_spe	Source code
.spatialCoords_validity	Source code
.spatialData_validity	Source code
.spe_show	Source code
.spi_show	Source code
GET_FUN	Source code
LoadedSpatialImage-class	Man page
RemoteSpatialImage-class	Man page
SET_FUN	Source code
SingleCellExperiment,	Man page
SpatialExperiment	Man page Source code
SpatialExperiment-assays	Man page
SpatialExperiment-class	Man page
SpatialExperiment-coercion	Man page
SpatialExperiment-colData	Man page
SpatialExperiment-combine	Man page
SpatialExperiment-method	Man page
SpatialExperiment-methods	Man page
SpatialExperiment-misc	Man page
SpatialExperiment-rotate-mirror	Man page
SpatialExperiment-subset	Man page
SpatialImage	Man page Source code
SpatialImage-class	Man page
SpatialImage-misc	Man page
StoredSpatialImage-class	Man page
VirtualSpatialImage-class	Man page
[,SpatialExperiment,ANY,ANY,ANY-method	Man page
addImg	Man page
addImg,SpatialExperiment-method	Man page
as.raster.VirtualSpatialImage	Source code
cbind,SingleCellExperiment-method	Man page
cbind,SpatialExperiment-method	Man page
coerce,	Man page
coerce,RemoteSpatialImage,StoredSpatialImage-method	Man page
coerce,VirtualSpatialImage,LoadedSpatialImage-method	Man page
colData	Man page
colData<-	Man page
colData<-,SpatialExperiment,DataFrame-method	Man page
colData<-,SpatialExperiment,NULL-method	Man page
dim,StoredSpatialImage-method	Man page
dim,VirtualSpatialImage-method	Man page
getImg	Man page
getImg,SpatialExperiment-method	Man page
imgData	Man page
imgData,SpatialExperiment-method	Man page
imgData-methods	Man page
imgData<-	Man page
imgData<-,SpatialExperiment,DataFrame-method	Man page
imgData<-,SpatialExperiment,NULL-method	Man page
imgRaster	Man page
imgRaster,LoadedSpatialImage-method	Man page
imgRaster,RemoteSpatialImage-method	Man page
imgRaster,SpatialExperiment-method	Man page
imgRaster,StoredSpatialImage-method	Man page
imgRaster<-	Man page
imgRaster<-,LoadedSpatialImage-method	Man page
imgSource	Man page
imgSource,LoadedSpatialImage-method	Man page
imgSource,RemoteSpatialImage-method	Man page
imgSource,SpatialExperiment-method	Man page
imgSource,StoredSpatialImage-method	Man page
imgSource<-	Man page
imgSource<-,RemoteSpatialImage,character-method	Man page
imgSource<-,StoredSpatialImage,character-method	Man page
mirrorCoords	Man page
mirrorCoords,SpatialExperiment-method	Man page
mirrorImg	Man page
mirrorImg,LoadedSpatialImage-method	Man page
mirrorImg,SpatialExperiment-method	Man page
mirrorImg,VirtualSpatialImage-method	Man page
mirrorObject	Man page
mirrorObject,SpatialExperiment-method	Man page
molecules	Man page
molecules,SpatialExperiment-method	Man page
molecules<-	Man page
molecules<-,SpatialExperiment-method	Man page
read10xVisium	Man page Source code
readImgData	Man page Source code
rmvImg	Man page
rmvImg,SpatialExperiment-method	Man page
rotateCoords	Man page
rotateCoords,SpatialExperiment-method	Man page
rotateImg	Man page
rotateImg,LoadedSpatialImage-method	Man page
rotateImg,SpatialExperiment-method	Man page
rotateImg,VirtualSpatialImage-method	Man page
rotateObject	Man page
rotateObject,SpatialExperiment-method	Man page
scaleFactors	Man page
scaleFactors,SpatialExperiment-method	Man page
show,SpatialExperiment-method	Man page
show,VirtualSpatialImage-method	Man page
spatialCoords	Man page
spatialCoords,SpatialExperiment-method	Man page
spatialCoords<-	Man page
spatialCoords<-,SpatialExperiment,NULL-method	Man page
spatialCoords<-,SpatialExperiment,matrix-method	Man page
spatialCoordsNames	Man page
spatialCoordsNames,SpatialExperiment-method	Man page
spatialCoordsNames<-	Man page
spatialCoordsNames<-,SpatialExperiment,NULL-method	Man page
spatialCoordsNames<-,SpatialExperiment,character-method	Man page
spatialData	Man page
spatialData,SpatialExperiment-method	Man page
spatialData<-	Man page
spatialData<-,SpatialExperiment,DFrame-method	Man page
spatialData<-,SpatialExperiment,NULL-method	Man page
spatialDataNames	Man page
spatialDataNames,SpatialExperiment-method	Man page
spatialDataNames<-	Man page
spatialDataNames<-,SpatialExperiment,NULL-method	Man page
spatialDataNames<-,SpatialExperiment,character-method	Man page
toSpatialExperiment	Man page Source code