Global functions | |
---|---|
.adapGridMosaicsZ0_IO | Man page Source code |
.adapGridMosaicsZ0_OS | Man page Source code |
.adapGridMosaicsZ0_TS | Man page Source code |
.annotateHMM | Source code |
.annotatePeak | Source code |
.calMDZ1_2S | Man page Source code |
.calcModelBIC | Man page Source code |
.calcPN | Man page Source code |
.calcYbdAll | Source code |
.computeStat | Man page Source code |
.constructExtRead | Source code |
.eStepZ1_2S | Man page Source code |
.emZ1_2S | Man page Source code |
.exportBED | Man page Source code |
.exportEncodePeak | Source code |
.exportGFF | Man page Source code |
.exportTXT | Man page Source code |
.extractPostProb | Source code |
.extread2GRanges | Source code |
.ff_emHMM | Source code |
.ff_stack | Source code |
.ff_updatePiMat | Source code |
.ff_viterbi | Source code |
.fitHMM | Source code |
.getPH_1S | Man page Source code |
.getPH_2S | Man page Source code |
.getParamZ0 | Man page Source code |
.getPi0 | Man page Source code |
.loadReadData | Source code |
.logLik | Source code |
.mStepZ1_2S | Man page Source code |
.margDistZ1_1S | Man page Source code |
.margDistZ1_2S | Man page Source code |
.margDist_1S | Man page Source code |
.margDist_2S | Man page Source code |
.mosaicsFit_IO | Man page Source code |
.mosaicsFit_OS | Man page Source code |
.mosaicsFit_TS | Man page Source code |
.mosaicsZ0 | Source code |
.mosaicsZ0_IO | Man page |
.mosaicsZ0_OS | Man page |
.mosaicsZ0_TS | Man page |
.mosaicsZ1_1S | Man page Source code |
.mosaicsZ1_2S | Man page Source code |
.peakCall | Man page Source code |
.plotGOF | Man page Source code |
.plotGOFHMM | Source code |
.processBin_MGC | Man page Source code |
.processBin_MGCX | Man page Source code |
.processBin_X | Man page Source code |
.processBin_XN | Source code |
.reportSummary | Man page Source code |
.rlmFit_IO | Man page Source code |
.rlmFit_OS | Man page Source code |
.rlmFit_TS | Man page Source code |
.simulateHMM_1S | Source code |
.simulateHMM_2S | Source code |
.trimExtend | Source code |
.validDataType | Man page Source code |
.validLocation | Man page Source code |
.validType | Man page Source code |
BinData-class | Man page |
MosaicsFit-class | Man page |
MosaicsFitEst-class | Man page |
MosaicsFitParam-class | Man page |
MosaicsHMM-class | Man page |
MosaicsPeak-class | Man page |
MosaicsPeakParam-class | Man page |
TagData-class | Man page |
adjustBoundary | Man page |
adjustBoundary,MosaicsPeak-method | Man page |
bdBin | Man page |
bdBin,MosaicsPeak-method | Man page |
chrID | Man page |
chrID,BinData-method | Man page |
constructBins | Man page Source code |
conv_1S | Man page Source code |
conv_2S | Man page Source code |
coord | Man page |
coord,BinData-method | Man page |
empFDR | Man page |
empFDR,MosaicsPeak-method | Man page |
estimates | Man page |
estimates,MosaicsFit-method | Man page |
estimates,MosaicsHMM-method | Man page |
export | Man page |
export,MosaicsPeak-method | Man page Man page |
extractReads | Man page |
extractReads,MosaicsPeak-method | Man page |
filterPeak | Man page |
filterPeak,MosaicsPeak-method | Man page |
findSummit | Man page |
findSummit,MosaicsPeak-method | Man page |
gcContent | Man page |
gcContent,BinData-method | Man page |
generateWig | Man page Source code |
input | Man page |
input,BinData-method | Man page |
mappability | Man page |
mappability,BinData-method | Man page |
mosaics | Man page |
mosaics-package | Man page |
mosaicsFit | Man page |
mosaicsFit,BinData-method | Man page Man page |
mosaicsFitHMM | Man page |
mosaicsFitHMM,MosaicsFit-method | Man page |
mosaicsPeak | Man page |
mosaicsPeak,MosaicsFit-method | Man page |
mosaicsPeakHMM | Man page |
mosaicsPeakHMM,MosaicsHMM-method | Man page |
mosaicsRunAll | Man page Source code |
plot,BinData,missing-method | Man page |
plot,MosaicsFit,ANY-method | Man page |
plot,MosaicsHMM,missing-method | Man page |
plot,MosaicsPeak,missing-method | Man page |
postProb | Man page |
postProb,MosaicsPeak-method | Man page |
print,BinData-method | Man page |
print,MosaicsFit-method | Man page |
print,MosaicsHMM-method | Man page |
print,MosaicsPeak-method | Man page |
read | Man page |
read,MosaicsPeak-method | Man page |
readBins | Man page Source code |
readCoverage | Man page |
readCoverage,MosaicsPeak-method | Man page |
seqDepth | Man page |
seqDepth,BinData-method | Man page |
seqDepth,MosaicsFit-method | Man page |
seqDepth,MosaicsHMM-method | Man page |
seqDepth,MosaicsPeak-method | Man page |
show,BinData-method | Man page |
show,MosaicsFit-method | Man page |
show,MosaicsHMM-method | Man page |
show,MosaicsPeak-method | Man page |
tagCount | Man page |
tagCount,BinData-method | Man page |
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