Files in decusInLabore/biologicSeqTools

Seq Analysis Helper Functions

R/SBwebtools.pckg.r README.md man/DGEanalysis.Rd man/DotPlotSB.Rd man/LRTanalysis.Rd man/add.category.to.lab.reference.table.hs.Rd man/add2labCatSelectionDBtable.Rd man/add2vec.Rd man/addCoVar.Rd man/addDGEcomparisons2DesignFile.Rd man/addGeneAnnotation.Rd man/addProject2ProjectTable.Rd man/addTPMorFPKMtable.Rd man/assignDbUsersAndPrivileges.Rd man/bioLOGIC-class.Rd man/completeDesignBasedOnSampleID.Rd man/create.GSEA.table.Rd man/create.gmt.file.from.ref.data.table.Rd man/create.gsea.rnk.files.Rd man/create.rnaseqc.script.Rd man/create.timecourse.cat.lines.Rd man/create.tpm.and.fpkm.tables.Rd man/create.website.parameters.Rd man/createAlignmentShellScript.Rd man/createAnalysisFolders.Rd man/createAndFormatExcelOutputFiles.Rd man/createConcatenateFASTQfilesShellScript.Rd man/createDdsObject.Rd man/createDesignFileCrickASFsamples.Rd man/createExcelWorkbook.Rd man/createNewProject.Rd man/createPCAloadingPlots.Rd man/createRMDscript.Rd man/createRNAseqQCscript.Rd man/createSRAdownloadScript.Rd man/createSRRdownloadScript.Rd man/createSampleDendrogram.Rd man/createSettingsFile.Rd man/createSettingsJSON.Rd man/createSeuratSettingsFile.Rd man/createTrimGaloreShellScript.Rd man/createbulkRNASeqAnalysisBashScripts.Rd man/datatable.to.website.ptm.Rd man/dbcat2gmt.Rd man/do.differential.expression.analyis.Rd man/doDGEanalysis.Rd man/doLRTanalysis.Rd man/doLinearFittings.Rd man/doPCA.Rd man/doQuery.Rd man/excel.Rd man/hpcClusterSubmisison.Rd man/import.db.table.from.db.Rd man/inferDBcategories.Rd man/killDbConnections.Rd man/list.db.table.col.names.Rd man/list.db.tables.in.db.Rd man/listExistingProjects.Rd man/make.hm.Rd man/msigdb.gmt2refDB.Rd man/organizeFastqFiles.Rd man/prepareRSEMcountMatrix.Rd man/profileCluster.Rd man/readAndPrepareCountMatrix.Rd man/retrieve.gene.category.from.db.Rd man/selectHeatmapGenes.Rd man/setAnalysisPaths.Rd man/setCrickGenomeAndGeneNameTable.Rd man/setDataBaseParameters.Rd man/setMountingPoint.Rd man/upload.datatable.to.database.Rd man/upload.pca.table.to.db.Rd man/uploadDbTableInfile.Rd renv/activate.R