databio/GenomicDistributions: GenomicDistributions: fast analysis of genomic intervals with Bioconductor

If you have a set of genomic ranges, this package can help you with visualization and comparison. It produces several kinds of plots, for example: Chromosome distribution plots, which visualize how your regions are distributed over chromosomes; feature distance distribution plots, which visualizes how your regions are distributed relative to a feature of interest, like Transcription Start Sites (TSSs); genomic partition plots, which visualize how your regions overlap given genomic features such as promoters, introns, exons, or intergenic regions. It also makes it easy to compare one set of ranges to another.

Getting started

Package details

Bioconductor views Coverage DataRepresentation FunctionalGenomics GenomeAnnotation GenomeAssembly Sequencing Software Visualization
Maintainer
LicenseBSD_2_clause + file LICENSE
Version1.11.1
URL http://code.databio.org/GenomicDistributions
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("databio/GenomicDistributions")
databio/GenomicDistributions documentation built on April 30, 2024, 4:34 a.m.