daniel615212950/TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
The aim of TCGAbiolinks is : i) facilitate the GDC open-access data retrieval, ii) prepare the data using the appropriate pre-processing strategies, iii) provide the means to carry out different standard analyses and iv) to easily reproduce earlier research results. In more detail, the package provides multiple methods for analysis (e.g., differential expression analysis, identifying differentially methylated regions) and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.
Getting started
Browse package contents
Package details |
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| Author | Antonio Colaprico, Tiago Chedraoui Silva, Catharina Olsen, Luciano Garofano, Davide Garolini, Claudia Cava, Thais Sabedot, Tathiane Malta, Stefano M. Pagnotta, Isabella Castiglioni, Michele Ceccarelli, Gianluca Bontempi, Houtan Noushmehr |
| Bioconductor views | DNAMethylation DifferentialExpression DifferentialMethylation GeneExpression GeneRegulation MethylationArray Network Pathways Sequencing Software Survival |
| Maintainer | Tiago Chedraoui Silva <tiagochst@gmail.com>, Antonio Colaprico <axc1833@med.miami.edu> |
| License | GPL (>= 3) |
| Version | 2.21.8 |
| URL | https://github.com/BioinformaticsFMRP/TCGAbiolinks |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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