Files in daewoooo/StrandPhaseR

Phase template strands from Strand-seq data

R/LOHseeker.R R/StrandPhase.R R/assembleHaps.R R/bamregion2GRanges.R R/calcQualMeasures.R R/compareSingleCellHaps.R R/correctInversionPhasing.R R/export.R R/exportConsensus.R R/exportPhasedReads.R R/fillGaps.R R/genotypeStrandScells.R R/loadMatrices.R R/mapRecomb.R R/phaseChromsome.R R/plotting.R R/rwConfig.R R/sortMatrices.R R/splitReads.R R/utils-pipe.R R/vcf2ranges.R README.md man/LOHseeker.Rd man/assembleHaps.Rd man/bamregion2GRanges.Rd man/calcMatrixScore.Rd man/compareSingleCellHaps.Rd man/correctHetInv.Rd man/correctHomInv.Rd man/correctInvertedRegionPhasing.Rd man/exportBedGraph.Rd man/exportConsensus.Rd man/exportPhasedReads.Rd man/exportVCF.Rd man/fillGapsWithBam.Rd man/fillGapsWithVCF.Rd man/findRecomb.Rd man/genotypeStrandScells.Rd man/loadGRangesFromFiles.Rd man/loadMatrices.Rd man/mapRecomb.Rd man/phaseChromosome.Rd man/phaseHETinversion.Rd man/pipe.Rd man/plotHapDensity.Rd man/plotHaploSegs.Rd man/plotPhasedReads.Rd man/plotSingleCellHaps.Rd man/readConfig.Rd man/sliceRanges.Rd man/sortMatrices.Rd man/splitReads.Rd man/strandPhaseR.Rd man/vcf2ranges.Rd man/vcf2vranges.Rd man/writeConfig.Rd