tests/testthat/test-called_by_n_callers.R
In d3b-center/annoFuse: annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions
context("Test called by N caller filter")
out_annofuse <- system.file("extdata", "PutativeDriverAnnoFuse.tsv", package = "annoFuseData")
sfc <- read.delim(out_annofuse)
sfc_called <- called_by_n_callers(sfc, numCaller = 2)
test_that("Called by N caller output for standard fusion file input", {
expect_equal(colnames(sfc_called), c("Sample", "FusionName", "Caller", "Fusion_Type", "CalledBy", "caller_count", "note"))
})
d3b-center/annoFuse documentation built on Oct. 2, 2024, 4:17 a.m.
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context("Test called by N caller filter")
out_annofuse <- system.file("extdata", "PutativeDriverAnnoFuse.tsv", package = "annoFuseData")
sfc <- read.delim(out_annofuse)
sfc_called <- called_by_n_callers(sfc, numCaller = 2)
test_that("Called by N caller output for standard fusion file input", {
expect_equal(colnames(sfc_called), c("Sample", "FusionName", "Caller", "Fusion_Type", "CalledBy", "caller_count", "note"))
})
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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