NEWS.md

In csoneson/alevinQC: Generate QC Reports For Alevin Output

alevinQC 1.19.3

• Minor fixes to adapt to changes in ggplot2

alevinQC 1.19.2

• Add 'Close app' button to close the shiny application and return data

alevinQC 1.15.1

• Support BiocStyle::pdf_document and BiocStyle::html_document output formats (thanks to Mike Smith for insights regarding BiocStyle)

alevinQC 1.13.2

• Allow processing of alevin-fry data with unfiltered permitlist

alevinQC 1.13.1

• Bug fix; use nbr mapped reads to calculate fraction of reads in barcode list for alevin-fry

alevinQC 1.11.1

• Added support for reading alevin-fry output

alevinQC 1.5.2

• Added selected summary distributions to the reports, and a function to plot histograms of arbitrary numeric columns of the cbTable

alevinQC 1.3.1

• Added the possibility of providing custom cell barcode sets

alevinQC 1.1

• Added ability to process output from Salmon v0.14 or later

alevinQC 0.99.0

• Preparation for Bioconductor submission

alevinQC 0.1.0

• Initial version

csoneson/alevinQC documentation built on Dec. 25, 2024, 8:18 p.m.