as.list.glmGamPoi | Convert glmGamPoi object to a list |
estimate_betas_fisher_scoring | Estimate the Betas for Fixed Dispersions |
estimate_betas_group_wise | Estimate the Betas for Fixed Dispersions |
estimate_betas_roughly | Make a quick first guess where reasonable beta would be |
estimate_betas_roughly_group_wise | Make a quick first guess where reasonable beta would be for a... |
estimate_size_factors | Estimate the Size Factors |
format_matrix | Helper to format a matrix nicely |
glm_gp | Fit a Gamma-Poisson Generalized Linear Model |
glm_gp_impl | Internal Function to Fit a Gamma-Poisson GLM |
loc_median_fit | Estimate local median fit |
overdispersion_mle | Estimate the Overdispersion for a Vector of Counts |
overdispersion_shrinkage | Shrink the overdispersion estimates |
predict.glmGamPoi | Predict 'link' or 'response' values for Gamma-Poisson GLMs |
print.glmGamPoi | Pretty print the result from glm_gp() |
pseudobulk | Create a 'SingleCellExperiment' containing pseudo-bulk... |
residuals.glmGamPoi | Extract Residuals of Gamma Poisson Model |
solve_lm_for_A | Solve the equation Y = A B for A or B |
test_de | Test for Differential Expression |
variance_prior | Estimate the scale and df for a Inverse Chisquare... |
vars | Quote grouping variables |
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