sce: Example Single Cell RNA-Seq data in SingleCellExperiment...

In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Example Single Cell RNA-Seq data in SingleCellExperiment Object, subset of 10x public dataset

Description

https://support.10xgenomics.com/single-cell-gene-expression/datasets/2.1.0/pbmc4k A subset of 390 barcodes and top 200 genes were included in this example. Within 390 barcodes, 195 barcodes are empty droplet, 150 barcodes are cell barcode and 45 barcodes are doublets predicted by scrublet and doubletFinder package. This example only serves as a proof of concept and a tutoriol on how to run the functions in this package. The results should not be used for drawing scientific conclusions.

Usage

data("scExample")

Format

A SingleCellExperiment object.

Value

Example Single Cell RNA-Seq data in SingleCellExperiment Object, subset of 10x public dataset

Examples

data("scExample")

compbiomed/singleCellTK documentation built on Oct. 27, 2024, 3:26 a.m.