reportFindMarker: Get runFindMarker .html report

In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

Get runFindMarker .html report

Description

A function to generate .html Rmarkdown report containing the visualizations of the runFindMarker function output

Usage

reportFindMarker(inSCE, output_file = NULL, output_dir = NULL)

Arguments

inSCE	A SingleCellExperiment object containing the output from runFindMarker function
output_file	name of the generated file. If NULL then the output file name will be based on the name of the Rmarkdown template. Default NULL.
output_dir	name of the output directory to save the rendered file. If NULL the file is stored to the current working directory. Default NULL.

Value

An HTML file of the report will be generated at the path specified in the arguments.

compbiomed/singleCellTK documentation built on Oct. 27, 2024, 3:26 a.m.