In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data
The Single Cell Toolkit (SCTK) is an interactive scRNA-Seq analysis package that
allows a user to upload raw scRNA-Seq count matrices and perform downstream
scRNA-Seq analysis interactively through a web interface, or through a set of
R functions through the command line. The package is written in R with a
graphical user interface (GUI) written in Shiny. Users can perform analysis with
modules for conducting quality control, clustering, batch correction, differential
expression, pathway enrichment, and sample size calculator, all in a simple to
use point and click interface. The toolkit also supports command line data
processing, and results can be loaded into the GUI for additional exploration
and downstream analysis.
Vignettes
Due to the range of features that are available in SCTK, we have prepared several
vignettes to help you get started, which are all available at https://www.camplab.net/sctk/
Session info {.unnumbered}
sessionInfo()
compbiomed/singleCellTK documentation built on Oct. 27, 2024, 3:26 a.m.
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The Single Cell Toolkit (SCTK) is an interactive scRNA-Seq analysis package that allows a user to upload raw scRNA-Seq count matrices and perform downstream scRNA-Seq analysis interactively through a web interface, or through a set of R functions through the command line. The package is written in R with a graphical user interface (GUI) written in Shiny. Users can perform analysis with modules for conducting quality control, clustering, batch correction, differential expression, pathway enrichment, and sample size calculator, all in a simple to use point and click interface. The toolkit also supports command line data processing, and results can be loaded into the GUI for additional exploration and downstream analysis.
Vignettes
Due to the range of features that are available in SCTK, we have prepared several vignettes to help you get started, which are all available at https://www.camplab.net/sctk/
Session info {.unnumbered}
sessionInfo()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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