In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

require(singleCellTK)
require(ggplot2)

sce.qc<- params$object

    plotsQCMetrics<- plotRunPerCellQCResults(sce.qc)
    i="QCMetrics"
    cat(paste0('# ', i, ' {.tabset .tabset-fade} \n\n'))
    cat(paste0('## Sum \n\n'))
    plotsQCMetrics$sum
    cat(paste0('## Total \n\n'))
    plotsQCMetrics$detected
    cat(paste0('## Subsets mito sum \n\n'))
    plotsQCMetrics$subsets_mito_sum
    cat(paste0('## Subsets mito detected \n\n'))
    plotsQCMetrics$subsets_mito_detected
    cat(paste0('## Subsets mito percent \n\n'))
    plotsQCMetrics$subsets_mito_percent
    cat(paste0('## Session info \n\n'))
    sce.qc@metadata$scater$addPerCellQC

description_runPerCellQC <- descriptionRunPerCellQC()

{.unlisted .unnumbered .toc-ignore}

r description_runPerCellQC

compbiomed/singleCellTK documentation built on Oct. 27, 2024, 3:26 a.m.