In compbiomed/singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data

require(singleCellTK)
require(ggplot2)

sce<- params$object

    plotsEmptyDrops<- plotEmptyDropsResults(sce)
    i="EmptyDrops"
    cat(paste0('# ', i, ' {.tabset .tabset-fade} \n\n'))
    cat(paste0('## EmptyDrops, Total UMI counts vs Log-Probability \n\n'))
    plotsEmptyDrops$scatterEmptyDrops[[1]]
    cat(paste0('## Session info \n\n'))
    sce@metadata$runEmptyDrops

description_runEmptyDrops <- descriptionEmptyDrops()

{.unlisted .unnumbered .toc-ignore}

r description_runEmptyDrops

compbiomed/singleCellTK documentation built on Oct. 27, 2024, 3:26 a.m.