inst/shiny/ui/ui_profiler.R

In compbiomed/TBSignatureProfiler: Profile RNA-Seq Data Using TB Pathway Signatures

shiny::tabPanel(
  "Run TB Signature Profiler",
  shiny::sidebarPanel(
    shinyWidgets::pickerInput(
      "newassay", label = "Make Assay",
      choices = c("Log Counts" = "log", "CPM" = "cpm", "Log CPM" = "logcpm")),
    shiny::actionButton("mkassay", "Make Assay"),
    shiny::hr(),
    shiny::selectInput("profassay", "Select Assay for Profiler",
                       choices = NULL),
    shiny::selectInput("profalg", "Select Algorithm for Profiler",
                       choices = c("GSVA", "ssGSEA", "ASSIGN", "PLAGE",
                                   "Zscore", "singscore")),
    shiny::actionButton("runprofiler", "Run Profiler")
  ),
  shiny::mainPanel(
    shiny::h4("Covariates"),
    shiny::tableOutput("covars"),
    shiny::h4("Assays"),
    shiny::tableOutput("assays"),
    shiny::h4("TBSignatureProfiler Data"),
    shiny::hr(),
    DT::dataTableOutput("visdat", width = 700)
  )
)