NEWS.md

In compbiomed/BatchQC: Batch Effects Quality Control Software

Version 2.2.2

Minor Changes

• Updated SE object upload to allow assays of any name (no longer require one assay to be called "counts")

Version 2.2.1

Minor Changes

• Added pval information to the DESeq2 binomial evaluation

Version 2.1.6

Bug Fixes

• Corrected code for proper division of less than or 20+ samples

Version 2.1.5

bug Fixes

• Coerce variable of interest to a factor

Version 2.1.4

Major Changes

• Added negative binomial check for 20+ samples to DESeq2

Version 2.1.3

Major Changes

• Added negative binomial check for less than 20 samples to DESeq2

Version 2.1.2

Major Changes

• Added Variation Ratio Statistic to the explained variation tab

Minor Changes

• Removed extra "Samples" column from example data
• Uploaded bladder example data batch variable as a factor

Version 2.1.1

Bug Fixes

• Updated imports to include shinyjs
• Updated imports to remove dendextend which is no longer utilized
• Corrected typos in Intro vignette

Version 2.0.0

Bug Fixes

• Fixed various errors for the Bioconductor build

Major Changes

• Created interactive Shiny interface
• Allow user upload of data
• Allow user download of Batch corrected and/or normalized data
• Added Example Data Functionality

Minor Changes

• Added a NEWS.md file to track changes to the package.

Changes made to dendrogram

• Added dendrogram_color_palette.R for coloring dendrogram
• Updated dendrogram.R allowing batch & category to plot together

compbiomed/BatchQC documentation built on Nov. 16, 2024, 5:47 a.m.