inst/scripts/tcga_pipeline/README.md
In cbg-ethz/dce: Pathway Enrichment Based on Differential Causal Effects
TCGA pipeline
Snakemake workflow to automatically download data from TCGA, retrieve pathways from KEGG, compute DCEs, and visualize the results.
The goal is to understand how cancer progression through different stages affects biological pathways compared to normal samples.
cbg-ethz/dce documentation built on Oct. 29, 2022, 8:14 a.m.
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TCGA pipeline
Snakemake workflow to automatically download data from TCGA, retrieve pathways from KEGG, compute DCEs, and visualize the results. The goal is to understand how cancer progression through different stages affects biological pathways compared to normal samples.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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