runParams: Get run parameters from a celda model 'SingleCellExperiment'...

In campbio/celda: CEllular Latent Dirichlet Allocation

Get run parameters from a celda model SingleCellExperiment or celdaList object

Description

Returns details on the clustering parameters and model priors from the celdaList object when it was created.

Usage

runParams(x, altExpName = "featureSubset")

## S4 method for signature 'SingleCellExperiment'
runParams(x, altExpName = "featureSubset")

## S4 method for signature 'celdaList'
runParams(x)

Arguments

x	An object of class SingleCellExperiment or class celdaList.
altExpName	The name for the altExp slot to use. Default "featureSubset".

Value

Data Frame. Contains details on the various K/L parameters, chain parameters, seed, and final log-likelihoods derived for each model in the provided celdaList.

Examples

data(sceCeldaCGGridSearch)
runParams(sceCeldaCGGridSearch)
data(celdaCGGridSearchRes)
runParams(celdaCGGridSearchRes)

campbio/celda documentation built on April 5, 2024, 11:47 a.m.