bicbioeng/ctgGEM: Generating Tree Hierarchy Visualizations from Gene Expression Data

Cell Tree Generator for Gene Expression Matrices (ctgGEM) streamlines the building of cell-state hierarchies from single-cell gene expression data across multiple existing tools for improved comparability and reproducibility. It supports pseudotemporal ordering algorithms and visualization tools from monocle, cellTree, TSCAN, sincell, and destiny, and provides a unified output format for integration with downstream data analysis workflows and Cytoscape.

install.packages("remotes")
remotes::install_github("bicbioeng/ctgGEM")