trainModel-NCSModel-method: Train a NetworkCommunitySearchModel

In bhklab/PDATK: Pancreatic Ductal Adenocarcinoma Tool-Kit

Description

Train a NetworkCommunitySearchModel

Usage

## S4 method for signature 'NCSModel'
trainModel(object, alpha = 0.05, minRepro = 0.5, minCor = 0)

Arguments

object	An NCSModel object, created from a ConsensusMetaclusteringModel.
alpha	A float specifying the significance level for cluster reproducibility. Default is 0.05.
minRepro	A float specifying the minimum in-group proportion (IGP) for a cluster to be included in the metacluster labels. Default is 0.5.
minCor	A float specifying the minimum correlation between a centroid and assay cluster to be included in the metacluster labels. Default is 0.0.

Value

The NCSModel from object with the networkEdges item of the models slot fitlered based on the specified criteria. The criteria are also stored in the modelParam slots to ensure reproducibility.

bhklab/PDATK documentation built on Dec. 27, 2021, 7:46 a.m.