is_diann_report: Is diann, fragpipe, proteingroups, phosphosites file?

In bhagwataditya/autonomics: Unified statistal Modeling of Omics Data

Is diann, fragpipe, proteingroups, phosphosites file?

Description

Is diann, fragpipe, proteingroups, phosphosites file?

Usage

is_diann_report(x, .xname = get_name_in_parent(x))

is_fragpipe_tsv(x, .xname = get_name_in_parent(x))

is_maxquant_proteingroups(x, .xname = get_name_in_parent(x))

is_maxquant_phosphosites(x, .xname = get_name_in_parent(x))

is_compounddiscoverer_output(x, .xname = get_name_in_parent(x))

assert_diann_report(x, .xname = get_name_in_parent(x))

assert_fragpipe_tsv(x, .xname = get_name_in_parent(x))

assert_maxquant_proteingroups(x, .xname = get_name_in_parent(x))

assert_maxquant_phosphosites(x, .xname = get_name_in_parent(x))

assert_compounddiscoverer_output(x, .xname = get_name_in_parent(x))

Arguments

x	file
.xname	name of x

Examples

file <- NULL
is_diann_report(file)
is_fragpipe_tsv(file)
is_maxquant_proteingroups(file)
is_maxquant_phosphosites(file)

file <- 3
is_diann_report(file)
is_fragpipe_tsv(file)
is_maxquant_proteingroups(file)
is_maxquant_phosphosites(file)

file <- 'blabla.tsv'
is_diann_report(file)
is_fragpipe_tsv(file)
is_maxquant_proteingroups(file)
is_maxquant_phosphosites(file)

file <- download_data('multiorganism.combined_protein.tsv')
is_diann_report(file)
is_fragpipe_tsv(file)
is_maxquant_proteingroups(file)
is_maxquant_phosphosites(file)

file <- download_data('dilution.report.tsv')
is_diann_report(file)
is_fragpipe_tsv(file)
is_maxquant_proteingroups(file)
is_maxquant_phosphosites(file)

file <- system.file('extdata/fukuda20.proteingroups.txt', package = 'autonomics')
is_diann_report(file)
is_fragpipe_tsv(file)
is_maxquant_proteingroups(file)
is_maxquant_phosphosites(file)

file <- system.file('extdata/billing19.phosphosites.txt', package = 'autonomics')
is_diann_report(file)
is_fragpipe_tsv(file)
is_maxquant_proteingroups(file)
is_maxquant_phosphosites(file)

bhagwataditya/autonomics documentation built on Nov. 1, 2024, 5:47 a.m.