benjjneb/decontam: Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
Simple statistical identification of contaminating sequence features in marker-gene or metagenomics data. Works on any kind of feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic groups, MAGs,...). Requires DNA quantitation data or sequenced negative control samples.
Getting started
Browse package contents
Package details |
|
|---|---|
| Bioconductor views | Classification ImmunoOncology Metagenomics Microbiome Sequencing |
| Maintainer | Benjamin Callahan <benjamin.j.callahan@gmail.com> |
| License | Artistic-2.0 |
| Version | 1.13.0 |
| URL | https://github.com/benjjneb/decontam |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
