Man pages for ataudt/popmeth
Imputation-guided re-construction of complete methylomes from WGBS data
| arabidopsis_chromosomes | Chromosome lengths for Arabidopsis |
| arabidopsis_genes | Gene coordinates for Arabidopsis (chr1) |
| arabidopsis_TEs | Transposable element coordinates for Arabidopsis (chr1) |
| arabidopsis_toydata | Toy data for Arabidopsis (200.000bp of chr1) |
| binning | Methimpute binning functions |
| binomialTestMethylation | Call methylation status |
| callMethylation | Call methylation status |
| callMethylationSeparate | Call methylation status |
| collapseBins | Collapse consecutive bins |
| distanceCorrelation | Distance correlation |
| estimateTransDist | 'transDist' parameter |
| exportMethylome | Export a methylome |
| extractCytosinesFromFASTA | Extract cytosine coordinates |
| getDistinctColors | Get distinct colors |
| getPosteriors | Get original posteriors |
| getStateColors | Get state colors |
| import | Methimpute data import |
| importRene | Import a Rene methylation extractor file |
| inflateMethylome | Inflate an imported methylation extractor file |
| loadFromFiles | Load 'methimpute' objects from file |
| methimputeBinomialHMM | methimputeBinomialHMM |
| methimputeData | methimputeData |
| methimpute-objects | methimpute objects |
| methimpute-package | methIMPUTE: Imputation-guided methylation status calling for... |
| parameterScan | Perform a parameter scan |
| plotting | Methimpute plotting functions |
| print.methimputeBinomialHMM | Print model object |
| transCoord | Transform genomic coordinates |
