Files in alinaselega/BUMHMM
Computational pipeline for computing probability of modification from structure probing experiment data
.Rbuildignore
.gitignore
BUMHMM.Rproj
DESCRIPTION
LICENSE
NAMESPACE
R/betaParamsEM.R
R/betaParamsMStep.R
R/computeProbs.R
R/computeStretches.R
R/findPatternPos.R
R/hmmFwbw.R
R/nuclPerm.R
R/scaleDOR.R
R/selectNuclPos.R
R/stabiliseVariance.R
README.md
data/covFile.RData
data/docFile.RData
data/dorFile.RData
data/se.RData
data/seq.RData
inst/CITATION
inst/NEWS.Rd
man/computeProbs.Rd
man/computeStretches.Rd
man/covFile.Rd
man/docFile.Rd
man/dorFile.Rd
man/findPatternPos.Rd
man/nuclPerm.Rd
man/scaleDOR.Rd
man/se.Rd
man/selectNuclPos.Rd
man/seq.Rd
man/stabiliseVariance.Rd
tests/testthat.R
tests/testthat/test_computeProbs.R
tests/testthat/test_computeStretches.R
tests/testthat/test_findPatternPos.R
tests/testthat/test_nuclPerm.R
tests/testthat/test_scaleDOR.R
tests/testthat/test_selectNuclPos.R
tests/testthat/test_stabiliseVariance.R
vignettes/BUMHMM-concordance.tex
vignettes/BUMHMM.Rnw
vignettes/BUMHMM.pdf
vignettes/BUMHMM.synctex.gz
vignettes/BUMHMM.tex
vignettes/toyEx_structureProbing.png
vignettes/vignette.bib
