Files in alexchwong/SpliceWiz

interactive analysis and visualization of alternative splicing in R

R/ASE-GLM-edgeR.R R/ASE-methods.R R/ASEFilter-methods.R R/AllClasses.R R/AllGenerics.R R/AllImports.R R/BuildRef.R R/BuildRef_GO.R R/CollateData.R R/Coverage.R R/File_finders.R R/Filters.R R/MakeSE.R R/Mappability.R R/NxtSE-methods.R R/ProcessBAM.R R/ProcessBAM_docs.R R/RcppExports.R R/STAR_utils.R R/SpliceWiz-package.R R/ViewRef.R R/covDataObject-methods.R R/covPlotObject-methods.R R/covPlotly-methods.R R/dash.R R/dash_DE_server.R R/dash_DE_ui.R R/dash_GO_server.R R/dash_GO_ui.R R/dash_QC.R R/dash_cov_server.R R/dash_cov_ui.R R/dash_expr_server.R R/dash_expr_ui.R R/dash_filterModules.R R/dash_filters.R R/dash_globals.R R/dash_ref_new_server.R R/dash_ref_new_ui.R R/dash_server.R R/dash_settings.R R/dash_ui.R R/dash_vis_server.R R/dash_vis_ui.R R/example_data.R R/ggplot_themes.R R/globals.R R/make_plot_data.R R/plotCoverage.R R/utils.R R/wrappers.R R/zzz.R README.md inst/htslib_version/R/ProcessBAM_hts.R inst/htslib_version/README.md inst/htslib_version/tests/testthat/test-OpenMP-hts.R inst/htslib_version/tests/testthat/test-SpliceWiz-hts.R inst/scripts/make-data.R man/ASE-GLM-edgeR.Rd man/ASE-methods.Rd man/ASEFilter-class.Rd man/Build-Reference-methods.Rd man/Coverage.Rd man/Gene-ontology-methods.Rd man/Graphics-User-Interface.Rd man/Mappability-methods.Rd man/NxtSE-class.Rd man/Run_SpliceWiz_Filters.Rd man/STAR-methods.Rd man/SpliceWiz-package.Rd man/View-Reference-methods.Rd man/collateData.Rd man/coord2GR.Rd man/covDataObject-class.Rd man/covPlotObject-class.Rd man/covPlotly-class.Rd man/example-SpliceWiz-data.Rd man/findSamples.Rd man/isCOV.Rd man/makeSE.Rd man/make_plot_data.Rd man/plotCoverage.Rd man/processBAM.Rd man/setSWthreads.Rd man/theme_white.Rd tests/testthat.R tests/testthat/test-Mappa.R tests/testthat/test-OpenMP.R tests/testthat/test-SpliceWiz-GTF.R tests/testthat/test-SpliceWiz-Novel.R tests/testthat/test-SpliceWiz.R tests/testthat/test-Weblink-Fetching.R tests/testthat/test-buildRef-seqnames.R vignettes/SW_Cookbook.Rmd vignettes/SW_QuickStart.Rmd