test_repertoires/README.md

In airr-community/rep-cred: Repertoire Credibility

Test repertoires

• airr-covid-19.tsv

curl -k -s --data '{"filters":{"op":"=","content":{"field":"repertoire_id", "value"
:"615623b66d7bc19b84b9ae54"}}, "format":"tsv"}' https://covid19-1.ireceptor.org/airr/v1/rearrangement > airr-covid-19.tsv

• PRJNA381394_12.tsv

5000 records from PRJNA381394, subject B00_CLL_05_10x, repertoire_id = 12, ipa5.ireceptor.org.

curl -k -s --data '{"filters":{"op":"=","content":{"field":"repertoire_id", "value"
:"12"}}, "format":"tsv", "size":5000}' https://ipa5.ireceptor.org/airr/v1/rearrangement > PRJNA381394_12.tsv

• PRJCA002413_HC3.tsv

PRJCA002413, repertoire_id = PRJCA002413-Healthy_Control_3-IGH on covid19-1.ireceptor.org

curl -k -s --data '{"filters":{"op":"=","content":{"field":"repertoire_id", "value"
:"PRJCA002413-Healthy_Control_3-IGH"}}, "format":"tsv", "size":5000}' https://covid19-1.ireceptor.org/airr/v1/rearrangement > PRJCA002413_HC3.tsv

rm -rf tmp/* inst/repcred.R -r test_repertoires/PRJCA002413_HC3.tsv -o tmp -d TRUE

• PRJNA752617.tsv

curl -k -s --data '{"filters":{"op":"=","content":{"field":"repertoire_id", "value"
:"613b7f3eadf6058ccd849076"}}, "format":"tsv", "size":5000}' https://covid19-1.ireceptor.org/airr/v1/rearrangement > PRJNA752617.tsv

inst/repcred.R -r test_repertoires/PRJNA752617.tsv -o tmp -d TRUE

• PRJNA715378.tsv

curl -k -s --data '{"filters":{"op":"=","content":{"field":"repertoire_id", "value"
:"609e9b638a4ef25782e2104e"}}, "format":"tsv", "size":5000}' https://covid19-1.ireceptor.org/airr/v1/rearrangement > PRJNA715378.tsv

inst/repcred.R -r test_repertoires/PRJNA715378.tsv -o tmp -d TRUE

• 613b7f3eadf6058ccd849076.tsv

curl -k -s --data '{"filters":{"op":"=","content":{"field":"repertoire_id", "value"
:"613b7f3eadf6058ccd849076"}}, "format":"tsv", "size":5000}' https://covid19-1.ireceptor.org/airr/v1/rearrangement > 613b7f3eadf6058ccd849076.tsv

inst/repcred.R -r test_repertoires/613b7f3eadf6058ccd849076.tsv -o tmp -d TRUE

• 5f21e817e1adeb2edc126144.tsv

curl -k -s --data '{"filters":{"op":"=","content":{"field":"repertoire_id", "value"
:"5f21e817e1adeb2edc126144"}}, "format":"tsv", "size":5000}' https://covid19-1.ireceptor.org/airr/v1/rearrangement > 5f21e817e1adeb2edc126144.tsv

inst/repcred.R -r test_repertoires/5f21e817e1adeb2edc126144.tsv -o tmp -d TRUE

• 5efbc7325f94cb6215deecfc.tsv

curl -k -s --data '{"filters":{"op":"=","content":{"field":"repertoire_id", "value"
:"5efbc7325f94cb6215deecfc"}}, "format":"tsv", "size":5000}' https://covid19-1.ireceptor.org/airr/v1/rearrangement > 5efbc7325f94cb6215deecfc.tsv

inst/repcred.R -r test_repertoires/5efbc7325f94cb6215deecfc.tsv -o tmp -d TRUE

• 6079e74f20652127e6351593.tsv

curl -k -s --data '{"filters":{"op":"=","content":{"field":"repertoire_id", "value"
:"6079e74f20652127e6351593"}}, "format":"tsv", "size":5000}' https://covid19-1.ireceptor.org/airr/v1/rearrangement > 6079e74f20652127e6351593.tsv

inst/repcred.R -r test_repertoires/6079e74f20652127e6351593.tsv -o tmp -d TRUE

• 5edd817b7dd6ee5ee410772b.tsv

curl -k -s --data '{"filters":{"op":"=","content":{"field":"repertoire_id", "value"
:"5edd817b7dd6ee5ee410772b"}}, "format":"tsv", "size":5000}' https://covid19-2.ireceptor.org/airr/v1/rearrangement > 5edd817b7dd6ee5ee410772b.tsv

inst/repcred.R -r test_repertoires/5edd817b7dd6ee5ee410772b.tsv -o tmp -d TRUE

• 1434_exp_RLQ_pos_beta.tsv

curl -k -s --data '{"filters":{"op":"=","content":{"field":"repertoire_id", "value"
:"5f07aa9039579433171763ce"}}, "format":"tsv", "size":5000}' https://covid19-1.ireceptor.org/airr/v1/rearrangement > 1434_exp_RLQ_pos_beta.tsv

inst/repcred.R -r test_repertoires/1434_exp_RLQ_pos_beta.tsv -o tmp -d TRUE

airr-community/rep-cred documentation built on July 13, 2024, 1 p.m.