API for acidgenomics/r-acidsinglecell
Acid Genomics Single Cell Experiment

Global functions
.diffExp.DESeq2	Source code
.diffExp.edgeR	Source code
.group	Source code
.hasDesignFormula	Source code
.underpoweredContrast	Source code
AcidSingleCell	Man page
AcidSingleCell-package	Man page
AcidSingleCellTestsUrl	Man page
CellCycleMarkers	Man page
CellCycleMarkers-class	Man page
CellTypeMarkers	Man page
CellTypeMarkers-class	Man page
KnownMarkers-class	Man page
aggregate	Man page
aggregate,SingleCellExperiment-method	Man page
aggregateCellsToSamples	Man page
aggregateCellsToSamples,SingleCellExperiment-method	Man page
barcodeRanksPerSample	Man page
barcodeRanksPerSample,SingleCellExperiment-method	Man page
cellCountsPerCluster	Man page
cellCountsPerCluster,SingleCellExperiment-method	Man page
cellCycleMarkersList	Man page
cellToSample	Man page
cellToSample,SingleCellExperiment-method	Man page
cellTypeMarkersList	Man page
cellTypesPerCluster	Man page
cellTypesPerCluster,KnownMarkers-method	Man page
clusters	Man page
clusters,SingleCellExperiment-method	Man page
combine	Man page
combine,SingleCellExperiment,SingleCellExperiment-method	Man page
convertSampleIdsToNames	Man page
convertSampleIdsToNames,SingleCellExperiment-method	Man page
cpm	Man page
cpm,SingleCellExperiment-method	Man page
diffExp	Man page
diffExp,SingleCellExperiment-method	Man page
diffExpPerCluster	Man page
diffExpPerCluster,SingleCellExperiment-method	Man page
export	Man page
export,SingleCellExperiment,character-method	Man page
filterCells	Man page
filterCells,SingleCellExperiment-method	Man page
findMarkers	Man page
findMarkers,SingleCellExperiment-method	Man page
geometricMean	Man page
geometricMean,sparseMatrix-method	Man page
importCellCycleMarkers	Man page Source code
importCellTypeMarkers	Man page Source code
indropsSampleIndexCounts	Man page Source code
makeSingleCellExperiment	Man page Source code
mapCellsToSamples	Man page Source code
melt	Man page
melt,SingleCellExperiment-method	Man page
metrics	Man page
metrics,SingleCellExperiment-method	Man page
metricsPerSample	Man page
metricsPerSample,SingleCellExperiment-method	Man page
normalize	Man page
normalize,SingleCellExperiment-method	Man page
sampleData	Man page
sampleData,SingleCellExperiment-method	Man page
sampleData<-	Man page
sampleData<-,SingleCellExperiment,DFrame-method	Man page
selectSamples	Man page
selectSamples,SingleCellExperiment-method	Man page
show	Man page
show,CellCycleMarkers-method	Man page
show,CellTypeMarkers-method	Man page
subsetPerSample	Man page
subsetPerSample,SingleCellExperiment-method	Man page
topCellsPerSample	Man page
topCellsPerSample,SingleCellExperiment-method	Man page
zerosVsDepth	Man page
zerosVsDepth,SingleCellExperiment-method	Man page
zerosVsDepth,SummarizedExperiment-method	Man page
zerosVsDepth,matrix-method	Man page
zerosVsDepth,sparseMatrix-method	Man page