Man pages for acidgenomics/r-acidplots
Acid Genomics Plot Functions and Themes
| acid_discrete_coord_flip | Flip coordinates |
| acid_geom_abline | Reference line |
| acid_geom_bar | Bar chart |
| acid_geom_label | Text label |
| acid_geom_label_average | Average labels |
| acid_geom_label_repel | Repulsive textual annotations |
| AcidPlots-package | AcidPlots |
| AcidPlotsTestsUrl | AcidPlots test data URL |
| acid_pretty_breaks | Pretty breaks that resemble the base plotting engine |
| acid_scale_y_continuous_nopad | Remove Y axis padding |
| autoScale | Automatic color/fill scales to use with ggplot object |
| gradient | Hex color gradient generator |
| matchLabels | Match ggplot2 labels |
| palettes | Color palettes |
| plotBarcodeRanks | Plot barcode ranks |
| plotCellCounts | Plot cell counts |
| plotCellCountsPerCluster | Plot cell counts per cluster |
| plotCellTypesPerCluster | Plot cell types per cluster |
| plotCorrelation | Correlation X-Y scatterplot |
| plotCorrelationHeatmap | Correlation heatmap |
| plotCounts | Plot counts |
| plotCountsCorrelation | Plot counts correlation |
| plotCountsCorrelationHeatmap | Plot counts correlation heatmap |
| plotCountsPerBiotype | Plot counts per biotype |
| plotCountsPerCell | Plot counts per cell |
| plotCountsPerFeature | Plot counts per feature |
| plotCountsVsFeatures | Plot count and feature correlation |
| plotFeature | Plot feature |
| plotFeaturesDetected | Plot features detected |
| plotFeaturesPerCell | Plot features per cell |
| plotGenderMarkers | Plot sexually dimorphic gender marker genes |
| plotHeatmap | Heatmap |
| plotKnownMarkers | Plot known markers |
| plotMarker | Plot cell-type-specific gene markers |
| plotMitoRatio | Plot mitochondrial transcript abundance |
| plotMitoVsCoding | Plot mitochondrial vs. coding counts |
| plotNovelty | Plot novelty score |
| plotQc | Quality control |
| plotQuantileHeatmap | Quantile heatmap |
| plotReducedDim | Plot reduced dimensions |
| plotStackedBarPlot | Plot stacked bar plot |
| plotSums | Plot row or column sums |
| plotTotalCounts | Plot total read counts |
| plotUpset | UpSet plot |
| plotWaterfall | Plot waterfall |
| plotZerosVsDepth | Plot percentage of zeros vs. library depth |
| reexports | Objects exported from other packages |
| synesthesia | Synesthesia color palette |
| themes | ggplot2 themes |
