R/mimager-package.r

In aaronwolen/mimager: mimager: The Microarray Imager

#' mimager: The Microarray Imager
#'
#' \pkg{mimager} simplifies the creation of microarray images (sometimes called
#' "pseudo-images") for the purpose of identifying problematic regional
#' aberrations. Notable features include support for many of Bioconductor's core
#' microarray data structures, providng compatibility with a variety of common
#' microarray platforms, and the ability to visualize multiple microarrays
#' simultaneously.
#'
#' The following Bioconductor microarray data structures are currently
#' supported:
#'
#' \itemize{
#'   \item \code{\link[affy]{AffyBatch-class}} for Affymetrix GeneChip
#'     probe level data
#'    \item \code{\link[affyPLM]{PLMset-class}} for probe-level
#'      linear models fitted to Affymetrix GeneChip probe level data
#'    \item \code{\link[oligoClasses]{FeatureSetExtensions-class}} for storing
#'      Expression/Exon/SNP data from a variety of oligonucleotide platforms
#'    \item \code{\link[oligo]{oligoPLM-class}} for probe-level linear models
#'      fitted to any of the \code{FeatureSet}-like classes
#' }
#'
#' @docType package
#' @name mimager
#' @importFrom methods setGeneric setMethod
#' @importClassesFrom affy AffyBatch
#' @importClassesFrom affyPLM PLMset
#' @importClassesFrom oligoClasses FeatureSet
#' @importClassesFrom oligo oligoPLM
#' @importFrom Biobase featureNames sampleNames
#' @importFrom grid unit gpar
#' @import gtable
#' @import S4Vectors
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