In YuLab-SMU/ggtree: an R package for visualization of tree and annotation data

ggtree: an R package for visualization of phylogenetic trees with their annotation data

#library("txtplot")
library("badger")
library("ypages")
Biocpkg <- function (pkg) {
    sprintf("[%s](http://bioconductor.org/packages/%s)", pkg, pkg)
}

r badge_bioc_release("ggtree", "green")

cat(packageDescription('ggtree')$Description)

:writing_hand: Authors

Guangchuang YU

School of Basic Medical Sciences, Southern Medical University

https://yulab-smu.top

r badger::badge_custom('follow me on', 'WeChat', 'green', 'https://guangchuangyu.github.io/blog_images/biobabble.jpg')

If you use r Biocpkg('ggtree') in published research, please cite the most appropriate paper(s) from this list:

1. S Xu, L Li, X Luo, M Chen, W Tang, L Zhan, Z Dai, TT. Lam, Y Guan, G Yu. Ggtree: A serialized data object for visualization of a phylogenetic tree and annotation data. iMeta, 2022, 1(4):e56. doi: 10.1002/imt2.56
2. G Yu. Data Integration, Manipulation and Visualization of Phylogenetic Treess (1st edition). Chapman and Hall/CRC, 2022. doi: 10.1201/9781003279242
3. G Yu. Using ggtree to visualize data on tree-like structures. Current Protocols in Bioinformatics, 2020, 69:e96. doi: 10.1002/cpbi.96
4. Source code and data to reproduce figures in the article
5. G Yu^*^, TTY Lam, H Zhu, Y Guan^*^. Two methods for mapping and visualizing associated data on phylogeny using ggtree. Molecular Biology and Evolution, 2018, 35(2):3041-3043. doi: 10.1093/molbev/msy194
   • Source code to produce Supplementary Material
6. G Yu, DK Smith, H Zhu, Y Guan, TTY Lam^*^. ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data. Methods in Ecology and Evolution. 2017, 8(1):28-36. doi: 10.1111/2041-210X.12628

:sparkling_heart: Contributing

We welcome any contributions! By participating in this project you agree to abide by the terms outlined in the Contributor Code of Conduct.

YuLab-SMU/ggtree documentation built on Nov. 3, 2024, 4:15 p.m.