TODO.md

In YuLab-SMU/enrichplot: Visualization of Functional Enrichment Result

TODO LIST

• [ ] manhattan plot for enriched result
• figure 1 of https://f1000research.com/articles/9-709
• [ ] Circos plot for expression prifile and pathway annotation
• Fig 2 of https://doi.org/10.1038/s41467-020-14802-2
• maybe a cartisian coordination version, i.e. a heatmap with a dot table to indicate the pathways belong.
• [ ] plot enriched terms as a tree
• hc(1-sim), where sim is calculated by GOSemSim, and visualize by ggtree
• label clade with representative words
• [ ] plot gene expression profile by PCA (or other methods) and label clusters with representative words

YuLab-SMU/enrichplot documentation built on Jan. 10, 2025, 4:44 a.m.